☰ Navigation Tabs
Crystal Structure of B562RIL with engineered disulfide bond A20C-Q25C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M6T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 3.2M NH4(SO4),
0.1M Bicine
2.44mM N-octanoylsucrose
Crystal Properties Matthews coefficient Solvent content 2.16 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.665 α = 90 b = 120.87 β = 90.04 c = 95.255 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2016-08-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9793 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 37.7 99 12.35 3.7 79301 30.41
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1M6T 2.2 37.7 1.36 79301 2786 97.73 0.2226 0.221 0.222 0.2673 0.2692
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.042 f_angle_d 0.926 f_chiral_restr 0.043 f_bond_d 0.008 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6599 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms 35
Software Software Software Name Purpose PHENIX refinement HKL-2000 data scaling PHENIX phasing