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Crystal structure of an aromatic prenyltransferase FAMD1 from Fischerella ambigua UTEX 1903
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 1.0 M sodium citrate, 0.1 M Imidazole pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.94 58.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.398 α = 90 b = 211.4 β = 90 c = 82.639 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2017-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1.0 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 25 99.9 0.044 0.051 0.024 10.7 4.3 76749
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.85 99.3 0.255 0.291 0.139 0.954 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.79 25 72853 3876 99.7 0.11192 0.10889 0.1121 0.17062 0.1722 RANDOM 24.163
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 -0.36 -0.62
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.883 r_dihedral_angle_2_deg 35.559 r_sphericity_bonded 17.385 r_dihedral_angle_4_deg 16.506 r_dihedral_angle_3_deg 14.651 r_long_range_B_refined 7.129 r_scangle_other 7.104 r_long_range_B_other 6.83 r_scbond_it 6.692 r_scbond_other 6.692
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.883 r_dihedral_angle_2_deg 35.559 r_sphericity_bonded 17.385 r_dihedral_angle_4_deg 16.506 r_dihedral_angle_3_deg 14.651 r_long_range_B_refined 7.129 r_scangle_other 7.104 r_long_range_B_other 6.83 r_scbond_it 6.692 r_scbond_other 6.692 r_mcangle_other 5.964 r_mcangle_it 5.952 r_dihedral_angle_1_deg 5.889 r_rigid_bond_restr 5.752 r_mcbond_it 5.224 r_mcbond_other 5.187 r_angle_refined_deg 1.5 r_angle_other_deg 0.778 r_chiral_restr 0.104 r_gen_planes_refined 0.013 r_bond_refined_d 0.011 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4884 Nucleic Acid Atoms Solvent Atoms 720 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling PDB_EXTRACT data extraction HKL-2000 data reduction SOLVE phasing