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Crystal structure of AnkG LIR/LC3B complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UGM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 289 10% v/v 2-propanol, 0.2 M zinc acetate, 0.1 M MES buffer (pH 6.5)
Crystal Properties Matthews coefficient Solvent content 2.65 53.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.553 α = 90 b = 64.553 β = 90 c = 155.461 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9793 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.7 0.134 0.149 0.064 7.4 5.3 6417
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 100 1.21 1.338 0.563 0.547 1.9 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UGM 2.6 50 6052 314 99.22 0.2194 0.2174 0.2199 0.2589 0.2629 RANDOM 53.855
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.3 0.61 -1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.059 r_dihedral_angle_4_deg 18.192 r_dihedral_angle_3_deg 17.765 r_dihedral_angle_1_deg 5.608 r_angle_refined_deg 1.265 r_angle_other_deg 0.95 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.059 r_dihedral_angle_4_deg 18.192 r_dihedral_angle_3_deg 17.765 r_dihedral_angle_1_deg 5.608 r_angle_refined_deg 1.265 r_angle_other_deg 0.95 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1050 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data collection SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing