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The crystal structure of Staphylococcus aureus CntA in complex with staphylopine and zinc
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 287 0.1M BICINE pH 8.5, 8%(w/v) Polyethylene glycol monomethyl ether 5000
Crystal Properties Matthews coefficient Solvent content 2.47 50.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.07 α = 90 b = 156.349 β = 90 c = 42.257 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 PIXEL DECTRIS PILATUS3 6M 2017-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.9778 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 78.3 99.7 24.9 12.1 37675
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.03 78.3 35917 1886 99.44 0.16175 0.15908 0.1683 0.21312 0.2167 RANDOM 45.641
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.93 -4.78 1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.345 r_dihedral_angle_3_deg 15.178 r_dihedral_angle_4_deg 10.562 r_long_range_B_other 8.12 r_long_range_B_refined 8.116 r_scangle_other 6.918 r_dihedral_angle_1_deg 6.662 r_scbond_it 4.807 r_scbond_other 4.806 r_mcangle_it 4.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.345 r_dihedral_angle_3_deg 15.178 r_dihedral_angle_4_deg 10.562 r_long_range_B_other 8.12 r_long_range_B_refined 8.116 r_scangle_other 6.918 r_dihedral_angle_1_deg 6.662 r_scbond_it 4.807 r_scbond_other 4.806 r_mcangle_it 4.35 r_mcangle_other 4.349 r_mcbond_it 3.409 r_mcbond_other 3.402 r_angle_refined_deg 1.906 r_angle_other_deg 1.093 r_chiral_restr 0.124 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4039 Nucleic Acid Atoms Solvent Atoms 344 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing