☰ Navigation Tabs
Hetero-micro-seeding: Crystal structure of BPTI-[5,55]C14GA38I variant using micro-seeds from -C14GA38I variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZVX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 20-30% PEG4000; 0.2M Lithium Sulfate; 0.1M Tris-HCL, H8.5
Crystal Properties Matthews coefficient Solvent content 2.16 43.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 25.189 α = 90 b = 41.306 β = 99.35 c = 53.94 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 101 CCD AGILENT EOS CCD 2010-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 53.22 98.1 4.41 3.6 22666
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.43 98.1 0.279 0.279 4.41 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZVX 1.38 53.22 21055 1096 97.79 0.17828 0.17617 0.1861 0.21842 0.2228 RANDOM 14.839
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.528 r_dihedral_angle_4_deg 17.842 r_dihedral_angle_3_deg 15.239 r_dihedral_angle_1_deg 7.969 r_long_range_B_refined 6.799 r_long_range_B_other 6.436 r_scangle_other 4.028 r_scbond_it 2.727 r_scbond_other 2.724 r_angle_refined_deg 2.474
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.528 r_dihedral_angle_4_deg 17.842 r_dihedral_angle_3_deg 15.239 r_dihedral_angle_1_deg 7.969 r_long_range_B_refined 6.799 r_long_range_B_other 6.436 r_scangle_other 4.028 r_scbond_it 2.727 r_scbond_other 2.724 r_angle_refined_deg 2.474 r_mcangle_it 1.984 r_mcangle_other 1.982 r_mcbond_it 1.37 r_mcbond_other 1.362 r_angle_other_deg 1.19 r_chiral_restr 0.166 r_bond_refined_d 0.026 r_gen_planes_refined 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 902 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 15
Software Software Software Name Purpose SHELXL data collection DENZO data reduction SCALA data scaling REFMAC refinement