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Mycobacterium tuberculosis Pantothenate kinase mutant F247A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GEU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.5 295 25%PEG 3350,
200mM Ammonium sulphate,
100mM Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.26 45.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.829 α = 90 b = 104.719 β = 90 c = 145.35 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.953725 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 84.96 89.2 0.249 4.4 4 20268
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.37 93.9 0.537 2.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2GEU 3.2 84.96 18786 1032 90.1 0.29497 0.29135 0.291 0.35941 0.3571 RANDOM 36.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.57 8.84 -5.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.051 r_dihedral_angle_3_deg 21.066 r_dihedral_angle_4_deg 16.488 r_dihedral_angle_1_deg 6.242 r_angle_refined_deg 1.221 r_angle_other_deg 1.082 r_chiral_restr 0.065 r_bond_other_d 0.013 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.051 r_dihedral_angle_3_deg 21.066 r_dihedral_angle_4_deg 16.488 r_dihedral_angle_1_deg 6.242 r_angle_refined_deg 1.221 r_angle_other_deg 1.082 r_chiral_restr 0.065 r_bond_other_d 0.013 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8020 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing