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His/DOPA ligated cytochrome c from an anammox organism KSU-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 3.2M ammonium sulfate, 200mM Potassium sodium tartrate, 100mM Sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.55 51.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.794 α = 96.46 b = 47.687 β = 99.01 c = 48.993 γ = 102.13
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2016-12-11 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD RAYONIX MX300HE 2014-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU 2 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 1.7 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.32 50 96.3 0.044 0.051 0.026 16 4 83160
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.32 1.34 94.1 0.304 0.351 0.176 0.942 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.32 47.84 79049 4109 96.11 0.1559 0.1549 0.1641 0.1752 0.1813 RANDOM 14.807
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -0.17 -0.36 0.23 -0.09 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.368 r_dihedral_angle_4_deg 22.044 r_dihedral_angle_3_deg 13.011 r_dihedral_angle_1_deg 5.324 r_angle_refined_deg 1.822 r_angle_other_deg 1.26 r_chiral_restr 0.128 r_bond_refined_d 0.015 r_gen_planes_other 0.015 r_gen_planes_refined 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.368 r_dihedral_angle_4_deg 22.044 r_dihedral_angle_3_deg 13.011 r_dihedral_angle_1_deg 5.324 r_angle_refined_deg 1.822 r_angle_other_deg 1.26 r_chiral_restr 0.128 r_bond_refined_d 0.015 r_gen_planes_other 0.015 r_gen_planes_refined 0.014 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2610 Nucleic Acid Atoms Solvent Atoms 512 Heterogen Atoms 195
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PDB_EXTRACT data extraction AutoSol phasing HKL data scaling