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Crystal Structure of the mutant Human ROR gamma Ligand Binding Domain With rockogenin.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L0L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 299 0.1M MES pH6.0, 10% PEG6000, Sitting DROP, temperature 299K
Crystal Properties Matthews coefficient Solvent content 2.2 43.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.63 α = 90 b = 71.94 β = 90.06 c = 99.21 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2011-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 79.63 99.9 0.049 12.5 3.8 57108
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.486 1.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3L0L 2.2 79.63 54120 2971 99.55 0.19317 0.19052 0.1758 0.2411 0.2183 RANDOM 51.757
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -38.12 -0.47 51.05 -12.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.944 r_dihedral_angle_4_deg 21.219 r_dihedral_angle_3_deg 17.731 r_long_range_B_refined 12.22 r_mcangle_it 7.513 r_scbond_it 6.825 r_dihedral_angle_1_deg 6.132 r_mcbond_it 5.808 r_angle_refined_deg 1.602 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.944 r_dihedral_angle_4_deg 21.219 r_dihedral_angle_3_deg 17.731 r_long_range_B_refined 12.22 r_mcangle_it 7.513 r_scbond_it 6.825 r_dihedral_angle_1_deg 6.132 r_mcbond_it 5.808 r_angle_refined_deg 1.602 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7843 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing