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Crystal structure of T-Hg-T pair containing DNA duplex in the presence Ba2+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 10% v/v MPD
Crystal Properties Matthews coefficient Solvent content 2.17 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.997 α = 90 b = 40.997 β = 90 c = 24.928 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.979 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 99.8 14.5 7.6 4078
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 28.99 3793 175 97.76 0.15017 0.14799 0.148 0.1934 0.1811 RANDOM 16.564
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.66 3.66 -7.32
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.494 r_sphericity_bonded 12.819 r_long_range_B_refined 4.69 r_long_range_B_other 4.32 r_scangle_other 1.836 r_angle_other_deg 1.606 r_scbond_it 1.387 r_scbond_other 1.384 r_angle_refined_deg 1.136 r_rigid_bond_restr 0.857
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.494 r_sphericity_bonded 12.819 r_long_range_B_refined 4.69 r_long_range_B_other 4.32 r_scangle_other 1.836 r_angle_other_deg 1.606 r_scbond_it 1.387 r_scbond_other 1.384 r_angle_refined_deg 1.136 r_rigid_bond_restr 0.857 r_chiral_restr 0.07 r_gen_planes_refined 0.011 r_bond_refined_d 0.006 r_bond_other_d 0.006 r_gen_planes_other 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 160 Solvent Atoms 42 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELXDE phasing