5WJG

Using sound pulses to solve the crystal harvesting bottleneck


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4FON 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE6.52950.1 M BisTris pH 6.5, 0.08M CaCl2
Crystal Properties
Matthews coefficientSolvent content
2.0439.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.041α = 90
b = 68.041β = 90
c = 102.286γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2017-06-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.97913NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5102.2997.880.07621.810.236472

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4fon1.5102.2936472189697.880.125280.123660.15736RANDOM8.694
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.004
r_dihedral_angle_4_deg18.097
r_dihedral_angle_3_deg11.519
r_long_range_B_refined6.539
r_dihedral_angle_1_deg6.343
r_long_range_B_other5.495
r_scangle_other3.006
r_angle_refined_deg2.208
r_scbond_it2.081
r_scbond_other2.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.004
r_dihedral_angle_4_deg18.097
r_dihedral_angle_3_deg11.519
r_long_range_B_refined6.539
r_dihedral_angle_1_deg6.343
r_long_range_B_other5.495
r_scangle_other3.006
r_angle_refined_deg2.208
r_scbond_it2.081
r_scbond_other2.06
r_mcangle_other1.177
r_mcangle_it1.175
r_angle_other_deg1.038
r_mcbond_it0.809
r_mcbond_other0.791
r_chiral_restr0.148
r_bond_refined_d0.025
r_gen_planes_refined0.013
r_bond_other_d0.007
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2032
Nucleic Acid Atoms
Solvent Atoms480
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing