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Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins - N49A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QCB PDB entry 2QCB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 298 0.1 M sodium acetate, 2.0 M sodium sulfate
Crystal Properties Matthews coefficient Solvent content 2.19 43.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.51 α = 90 b = 57.51 β = 90 c = 174.81 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 54.63 99.9 18.6 11.2 24051
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2QCB 1.5 54.63 22773 1235 99.75 0.15495 0.15374 0.1541 0.17782 0.1781 RANDOM 15.492
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.13 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.725 r_sphericity_free 17.45 r_dihedral_angle_4_deg 14.886 r_dihedral_angle_3_deg 12.381 r_dihedral_angle_1_deg 6.356 r_sphericity_bonded 3.112 r_long_range_B_refined 1.655 r_long_range_B_other 1.476 r_angle_refined_deg 1.399 r_angle_other_deg 1.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.725 r_sphericity_free 17.45 r_dihedral_angle_4_deg 14.886 r_dihedral_angle_3_deg 12.381 r_dihedral_angle_1_deg 6.356 r_sphericity_bonded 3.112 r_long_range_B_refined 1.655 r_long_range_B_other 1.476 r_angle_refined_deg 1.399 r_angle_other_deg 1.266 r_mcangle_other 1.113 r_mcangle_it 1.099 r_rigid_bond_restr 1.069 r_scangle_other 1.017 r_scbond_it 0.97 r_scbond_other 0.97 r_mcbond_it 0.867 r_mcbond_other 0.828 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 933 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing