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Solution Structure of XPH1, a Hybrid Sequence of Xfaso 1 and Pfl 6, Two Cro Proteins With Different Folds
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 0.6 mM [U-13C; U-15N] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 90% H2O/10% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600 2 3D_13C-separated_NOESY 0.4 mM [U-13C; U-15N] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 100% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600 3 3D HNCO 0.4 mM [U-13C; U-15N] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 90% H2O/10% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600 4 3D HNCACB 0.4 mM [U-13C; U-15N] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 90% H2O/10% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600 5 3D CBCA(CO)NH 0.4 mM [U-13C; U-15N] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 90% H2O/10% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600 6 3D HCCH-TOCSY 0.4 mM [U-13C; U-15N] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 90% H2O/10% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600 7 2D 1H-13C HSQC aliphatic 1.8 mM [U-10% 13C] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 90% H2O/10% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600 8 2D 1H-15N HSQC 0.6 mM [U-13C; U-15N] XPH1, 50 mM NA- potassium phosphate, 150 mM NA- potassium chloride, 0.01 % NA- sodium azide, 0.1 mM NA- DSS 90% H2O/10% D2O 150 mM 6.5 1 atm 293 Varian INOVA 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics using CYANA Explicit water refinement of the lowest energy 20 structures was performed using CNS CNS
NMR Ensemble Information Conformer Selection Criteria lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger A. T. et.al. 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax