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Crystal structure of SsoPox AsC6 mutant (L72I-Y99F-I122L-L228M-F229S-W263L)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VC5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20-30 % (w/v) PEG 8000 and 50 mM Tris-HCl buffer (pH 8)
Crystal Properties Matthews coefficient Solvent content 2.35 47.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.65 α = 90 b = 105.8 β = 90 c = 154.53 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.00882 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 46.313 97.3 15.68 4.49 43204
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2vc5 2.55 46.31 41042 2161 97.29 0.19237 0.1892 0.2037 0.25185 0.2629 RANDOM 76.742
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 1.85 -2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.657 r_dihedral_angle_4_deg 17.549 r_dihedral_angle_3_deg 17.439 r_long_range_B_refined 8.087 r_long_range_B_other 8.086 r_dihedral_angle_1_deg 7.554 r_mcangle_it 4.804 r_mcangle_other 4.803 r_scangle_other 4.78 r_mcbond_other 2.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.657 r_dihedral_angle_4_deg 17.549 r_dihedral_angle_3_deg 17.439 r_long_range_B_refined 8.087 r_long_range_B_other 8.086 r_dihedral_angle_1_deg 7.554 r_mcangle_it 4.804 r_mcangle_other 4.803 r_scangle_other 4.78 r_mcbond_other 2.897 r_mcbond_it 2.896 r_scbond_it 2.88 r_scbond_other 2.88 r_angle_refined_deg 2.02 r_angle_other_deg 1.2 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9601 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing