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Crystal structure of mutant CJ YCEI protein (CJ-N182C) with monobromobimane guest structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5W37 PDB entry 5W37
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 3.2 M ammonium sulfate, 0.1 M Bis-Tris
Crystal Properties Matthews coefficient Solvent content 5.75 78.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.242 α = 90 b = 178.242 β = 90 c = 50.599 γ = 120
Symmetry Space Group P 6 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CMOS RDI CMOS_8M 2016-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.0 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 38.591 99.6 0.126 0.129 0.029 22.4 19.6 17262 17262
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.61 97.7 2.633 2.633 2.731 0.711 0.3 14.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 5W37 2.48 38.591 16385 873 99.5 0.2189 0.2175 0.2173 0.2448 0.2472 RANDOM 71.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.66 1.33 2.66 -8.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.674 r_dihedral_angle_4_deg 20.172 r_dihedral_angle_3_deg 19.571 r_dihedral_angle_1_deg 7.932 r_angle_refined_deg 2.013 r_chiral_restr 0.127 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1319 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 41
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing