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Sperm whale myoglobin H64A with nitric oxide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 0.1 M Tris-Hcl, 1 mM EDTA, pH 9
2.3 M Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 3.1 60.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.222 α = 90 b = 90.222 β = 90 c = 45.31 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2013-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 50 99.5 0.054 0.06 0.024 23.1 5.9 20265
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.81 93.5 0.091 0.107 0.055 0.987 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.78 29.61 19212 1034 99.72 0.1506 0.1487 0.1613 0.1864 0.1974 RANDOM 16.282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.06 0.06 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.382 r_dihedral_angle_4_deg 22.787 r_dihedral_angle_3_deg 13.358 r_dihedral_angle_1_deg 5.123 r_angle_refined_deg 2.186 r_mcangle_it 1.837 r_mcbond_it 1.37 r_mcbond_other 1.319 r_angle_other_deg 0.979 r_chiral_restr 0.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.382 r_dihedral_angle_4_deg 22.787 r_dihedral_angle_3_deg 13.358 r_dihedral_angle_1_deg 5.123 r_angle_refined_deg 2.186 r_mcangle_it 1.837 r_mcbond_it 1.37 r_mcbond_other 1.319 r_angle_other_deg 0.979 r_chiral_restr 0.151 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_gen_planes_other 0.007 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1212 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 93
Software Software Software Name Purpose HKL-2000 data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction