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Crystal structure of SsoPox AsA6 mutant (F46L-C258A-W263M-I280T) - closed form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VC5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 20-30 % (w/v) PEG 8000 and 50 mM Tris-HCl buffer (pH 8).
Crystal Properties Matthews coefficient Solvent content 2.42 49.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.17 α = 90 b = 103.61 β = 90 c = 152.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97934 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 48.7128 96.1 9.07 3.44 121915
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2vc5 2.15 48.7128 70416 3707 97.78 0.17433 0.17226 0.1738 0.21351 0.2153 RANDOM 24.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 0.19 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.669 r_dihedral_angle_4_deg 13.143 r_dihedral_angle_3_deg 11.293 r_long_range_B_refined 7.214 r_dihedral_angle_1_deg 4.638 r_scbond_it 3.114 r_mcangle_it 2.555 r_mcbond_it 1.735 r_angle_refined_deg 0.731 r_chiral_restr 0.051
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.669 r_dihedral_angle_4_deg 13.143 r_dihedral_angle_3_deg 11.293 r_long_range_B_refined 7.214 r_dihedral_angle_1_deg 4.638 r_scbond_it 3.114 r_mcangle_it 2.555 r_mcbond_it 1.735 r_angle_refined_deg 0.731 r_chiral_restr 0.051 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10008 Nucleic Acid Atoms Solvent Atoms 659 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing