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De Novo Photosynthetic Reaction Center Protein Equipped with Heme B and Zn(II) cations
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 277 2.7 M NaCl, 100 mM Na acetate
Crystal Properties Matthews coefficient Solvent content 2.61 52.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.747 α = 90 b = 43.747 β = 90 c = 245.522 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 Oxford Danfysik toroidal focusing mirror 2013-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 1.0781 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 41.21 99.7 0.099 0.105 0.999 15.3 8.779 43568 -3 23.325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.49 96.1 1.337 1.484 0.684 1.26 5.225
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 41.21 41378 2193 99.63 0.2034 0.2018 0.2118 0.2356 0.2414 RANDOM 23.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.215 r_dihedral_angle_4_deg 13.636 r_dihedral_angle_3_deg 13.346 r_dihedral_angle_1_deg 4.288 r_angle_refined_deg 2.236 r_angle_other_deg 1.07 r_chiral_restr 0.156 r_bond_refined_d 0.031 r_gen_planes_refined 0.011 r_gen_planes_other 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.215 r_dihedral_angle_4_deg 13.636 r_dihedral_angle_3_deg 13.346 r_dihedral_angle_1_deg 4.288 r_angle_refined_deg 2.236 r_angle_other_deg 1.07 r_chiral_restr 0.156 r_bond_refined_d 0.031 r_gen_planes_refined 0.011 r_gen_planes_other 0.009 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1585 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 91
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction