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Type II DAH7PS from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 278 0.1 M sodium acetate pH 5.5, 0.8 M sodium formate, 1 mM cobalt chloride, 1 mM phosphoenol pyruvate, 26 % PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.35 47.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.24 α = 90 b = 100.12 β = 90 c = 115.6 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2016-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 75.68 100 0.139 0.056 0.992 9.9 7.1 19777
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 100 0.392 0.156 0.962 4.2 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.35 75.68 18792 988 99.94 0.19713 0.19414 0.2048 0.256 0.2607 RANDOM 32.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.07 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.118 r_dihedral_angle_4_deg 18.664 r_dihedral_angle_3_deg 15.019 r_long_range_B_other 8.037 r_long_range_B_refined 8.033 r_dihedral_angle_1_deg 6.691 r_scangle_other 4.829 r_mcangle_it 3.909 r_mcangle_other 3.908 r_scbond_it 3.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.118 r_dihedral_angle_4_deg 18.664 r_dihedral_angle_3_deg 15.019 r_long_range_B_other 8.037 r_long_range_B_refined 8.033 r_dihedral_angle_1_deg 6.691 r_scangle_other 4.829 r_mcangle_it 3.909 r_mcangle_other 3.908 r_scbond_it 3.072 r_scbond_other 3.071 r_mcbond_it 2.578 r_mcbond_other 2.574 r_angle_refined_deg 1.756 r_angle_other_deg 1.074 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3371 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing