☰ Navigation Tabs
Sperm whale myoglobin H64Q with nitrite
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 0.1 M Tris-HCl, 1 mM EDTA, pH 9
2.5 M Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 3.1 60.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.388 α = 90 b = 90.388 β = 90 c = 45.244 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2013-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 50 99.9 0.068 0.07 0.017 41.8 16.8 19390
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.84 100 0.116 0.121 0.034 0.995 12.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 32 18200 979 98.74 0.1617 0.1595 0.1706 0.2009 0.2098 RANDOM 22.987
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 0.03 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.818 r_dihedral_angle_4_deg 25.44 r_dihedral_angle_3_deg 15.034 r_dihedral_angle_1_deg 5.003 r_angle_refined_deg 2.135 r_angle_other_deg 0.962 r_chiral_restr 0.158 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_gen_planes_other 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.818 r_dihedral_angle_4_deg 25.44 r_dihedral_angle_3_deg 15.034 r_dihedral_angle_1_deg 5.003 r_angle_refined_deg 2.135 r_angle_other_deg 0.962 r_chiral_restr 0.158 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_gen_planes_other 0.007 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1215 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 95
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL data scaling