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XAC2383 from Xanthomonas citri bound to ATP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 298 20 mM Tris pH 8.0, 300 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.02 39.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.366 α = 90 b = 67.115 β = 90 c = 113.702 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV++ 2014-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 43.38 99.89 5.77 6.8 29224
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.48 43.38 29224 1567 99.86 0.19478 0.19161 0.1776 0.25497 0.2419 RANDOM 41.424
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 -0.17 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.041 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_3_deg 14.098 r_dihedral_angle_1_deg 7.354 r_long_range_B_refined 7.134 r_long_range_B_other 7.13 r_scangle_other 5.221 r_mcangle_other 3.609 r_mcangle_it 3.608 r_scbond_it 3.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.041 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_3_deg 14.098 r_dihedral_angle_1_deg 7.354 r_long_range_B_refined 7.134 r_long_range_B_other 7.13 r_scangle_other 5.221 r_mcangle_other 3.609 r_mcangle_it 3.608 r_scbond_it 3.27 r_scbond_other 3.269 r_mcbond_it 2.442 r_mcbond_other 2.433 r_angle_refined_deg 1.727 r_angle_other_deg 1.007 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4345 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling PHASER phasing