☰ Navigation Tabs
Ocellatin-LB1, solution structure in DPC micelle by NMR spectroscopy
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 1.5 mM Ocellatin-LB1, 400 mM d38 DPC, 5 % 99.75% D2O trifluoroethanol/water Null 4 ambient 273.15 Bruker AVANCE III 800 2 2D 1H-1H NOESY 1.5 mM Ocellatin-LB1, 400 mM d38 DPC, 5 % 99.75% D2O trifluoroethanol/water Null 4 ambient 273.15 Bruker AVANCE III 800 3 2D 1H-15N HSQC 1.5 mM Ocellatin-LB1, 400 mM d38 DPC, 5 % 99.75% D2O trifluoroethanol/water Null 4 ambient 273.15 Bruker AVANCE III 800 4 2D 1H-13C HSQC 1.5 mM Ocellatin-LB1, 400 mM d38 DPC, 5 % 99.75% D2O trifluoroethanol/water Null 4 ambient 273.15 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 data analysis NMRView Johnson, One Moon Scientific 5 data analysis Procheck Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton 6 data analysis MOLMOL Koradi, Billeter and Wuthrich 7 refinement X-PLOR NIH 2.27 Schwieters, Kuszewski, Tjandra and Clore 8 structure calculation X-PLOR NIH 2.27 Schwieters, Kuszewski, Tjandra and Clore 9 geometry optimization X-PLOR NIH 2.27 Schwieters, Kuszewski, Tjandra and Clore