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Solution Structure of SinI, antagonist to the master biofilm-regulator SinR in Bacillus subtilis
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-15N] SinI, 20 mM MES, 200 mM sodium chloride 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 2 2D 1H-13C HSQC 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 3 3D HNCA 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 6 3D HN(CO)CA 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 4 3D HNCACB 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 12 3D CBCA(CO)NH 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 5 3D HNCO 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 7 3D HNCACO 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 8 3D 1H-15N TOCSY 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 9 3D C(CO)NH 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 10 3D 1H-15N NOESY 1 mM [U-15N] SinI, 20 mM MES, 200 mM sodium chloride 90% H2O/10% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700 11 3D 1H-13C NOESY 1 mM [U-13C; U-15N] SinI, 20 mM MES, 200 mM NaCl 100% D2O 200 mM 6 1 atm 293 Bruker AVANCE 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRView Johnson, One Moon Scientific 2 structure calculation CYANA 3.0 Guntert, Mumenthaler and Wuthrich 3 refinement Amber 14 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman 4 peak picking NMRView Johnson, One Moon Scientific 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax