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Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Pro306 fused to maltose binding protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TIB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 295 2.1 M sodium malonate
Crystal Properties Matthews coefficient Solvent content 3.47 64.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.599 α = 90 b = 274.569 β = 96.09 c = 174.019 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 300 mm CCD 2015-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0332 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 173.04 99.7 0.094 8.5 2.6 99563
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5TIB 3.5 173.04 99563 5198 99.74 0.2148 0.213 0.2141 0.2485 0.2172 RANDOM 89.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.01 2.94 1.25 -3.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.587 r_dihedral_angle_4_deg 21.913 r_dihedral_angle_3_deg 17.56 r_mcangle_it 9.732 r_mcbond_it 6.012 r_mcbond_other 6.012 r_dihedral_angle_1_deg 5.823 r_angle_other_deg 1.988 r_angle_refined_deg 1.678 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.587 r_dihedral_angle_4_deg 21.913 r_dihedral_angle_3_deg 17.56 r_mcangle_it 9.732 r_mcbond_it 6.012 r_mcbond_other 6.012 r_dihedral_angle_1_deg 5.823 r_angle_other_deg 1.988 r_angle_refined_deg 1.678 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_bond_other_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 39606 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 232
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction