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Crystal structure of BuGH2Cwt in complex with Galactoisofagomine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5T9A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.2M ammonium citrate, 20-24% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.71 54.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.23 α = 70.63 b = 121.13 β = 86.8 c = 124.459 γ = 78.77
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.9753 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 117.41 87.6 0.142 0.99 8.1 3.6 139311
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 82.5 0.638 0.786 2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5T9A 2.4 117.41 132324 6968 87.63 0.2093 0.2067 0.2146 0.2586 0.2639 RANDOM 30.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.63 -0.91 2.16 -3.63 0.86 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.655 r_dihedral_angle_4_deg 16.387 r_dihedral_angle_3_deg 13.697 r_dihedral_angle_1_deg 6.68 r_mcangle_it 1.835 r_angle_refined_deg 1.292 r_mcbond_it 1.09 r_mcbond_other 1.09 r_angle_other_deg 0.904 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.655 r_dihedral_angle_4_deg 16.387 r_dihedral_angle_3_deg 13.697 r_dihedral_angle_1_deg 6.68 r_mcangle_it 1.835 r_angle_refined_deg 1.292 r_mcbond_it 1.09 r_mcbond_other 1.09 r_angle_other_deg 0.904 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26014 Nucleic Acid Atoms Solvent Atoms 851 Heterogen Atoms 96
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction