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Synthesis and biological evaluation of novel selective androgen receptor modulators (SARMs). Part II: Optimization of 4-(pyrrolidin-1-yl)benzonitrile derivatives
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 ~1M ammonium phosphate dibasic
Crystal Properties Matthews coefficient Solvent content 2.1 41.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.449 α = 90 b = 65.675 β = 90 c = 70.713 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315 2007-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.987 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 35.46 87.2 0.092 15.2 5.9 6138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.78 58.5 0.178 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 35.46 5820 285 86.06 0.2015 0.1967 0.3047 0.3075 RANDOM 74.075
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -1.01 1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.9 r_dihedral_angle_3_deg 15.292 r_dihedral_angle_4_deg 9.658 r_dihedral_angle_1_deg 5.384 r_mcangle_it 3.167 r_mcbond_it 1.879 r_mcbond_other 1.877 r_angle_refined_deg 1.175 r_angle_other_deg 0.696 r_chiral_restr 0.055
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.9 r_dihedral_angle_3_deg 15.292 r_dihedral_angle_4_deg 9.658 r_dihedral_angle_1_deg 5.384 r_mcangle_it 3.167 r_mcbond_it 1.879 r_mcbond_other 1.877 r_angle_refined_deg 1.175 r_angle_other_deg 0.696 r_chiral_restr 0.055 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2033 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 24
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing HKL-2000 data reduction