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Structure of the Ebola virus envelope protein MPER/TM domain and its interaction with the fusion loop explains their fusion activity
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 500 uM [U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 2 3D HNCA 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 3 3D HNCO 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 4 3D HN(CO)CA 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 5 3D HN(CA)CO 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 9 3D CBCANH 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 8 3D 1H-15N NOESY 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 7 3D 1H-13C NOESY 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 800 6 3D 1H-13C NOESY aromatic 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 12 3D HCCH-TOCSY 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600 11 HCCCONH 500 uM [U-99% 13C; U-99% 15N] EBOV_MPER/TM 90% H2O/10% D2O 125 mM 5.5 1 atm 303 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking Sparky Goddard 5 chemical shift calculation TALOS Cornilescu, Delaglio and Bax 6 data analysis ProcheckNMR Laskowski and MacArthur 7 geometry optimization NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax