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B-DNA (CGCGAATTCGCG)2 soaked with selenourea for 1 min
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 Precipitant: 40 mM sodium cacodylate pH 7.0, 12 mM spermine tetrachloride, 80 mM NaCl, 10%(v/v) MPD; Well solution: 35% (v/v) MPD
Crystal Properties Matthews coefficient Solvent content 2.28 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.384 α = 90 b = 41.479 β = 90 c = 65.996 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2016-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.979 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 100 0.138 21.9 13.2 8220
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.64 100 1.307 2.1 10.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.58 25.82 7793 427 84.7 0.15 0.148 0.186 0.1941 RANDOM 16.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.37 0.85
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.809 r_sphericity_bonded 13.061 r_long_range_B_refined 4.938 r_scangle_other 4.432 r_long_range_B_other 4.141 r_scbond_it 3.429 r_scbond_other 3.426 r_rigid_bond_restr 3.254 r_angle_other_deg 1.737 r_angle_refined_deg 1.665
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.809 r_sphericity_bonded 13.061 r_long_range_B_refined 4.938 r_scangle_other 4.432 r_long_range_B_other 4.141 r_scbond_it 3.429 r_scbond_other 3.426 r_rigid_bond_restr 3.254 r_angle_other_deg 1.737 r_angle_refined_deg 1.665 r_chiral_restr 0.09 r_gen_planes_refined 0.03 r_bond_refined_d 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 486 Solvent Atoms 111 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing