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Dehydroquinate dehydratase from A. fumigatus AroM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 297 Protein: 6.1 mg/ml, 0.5 M NaCl, 10 mM Tris pH 8.3, 1 mM BME
Crystallization condition: JCSG+ F7 (qiagen), 0.8 M Succinic acid (pH 7)
Crystal Properties Matthews coefficient Solvent content 2.4 48.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.193 α = 90 b = 141.397 β = 90 c = 46.4 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G .978 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 94.2 0.099 16.7 5.6 31559
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 72 0.673 0.812 1.7 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 28.68 29930 1585 94.11 0.19398 0.19125 0.1973 0.24669 0.2484 RANDOM 44.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.26 -2.01 5.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.05 r_dihedral_angle_4_deg 15.648 r_dihedral_angle_3_deg 14.674 r_dihedral_angle_1_deg 5.914 r_long_range_B_refined 4.964 r_long_range_B_other 4.901 r_scangle_other 2.612 r_mcangle_it 2.369 r_mcangle_other 2.369 r_scbond_it 1.551
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.05 r_dihedral_angle_4_deg 15.648 r_dihedral_angle_3_deg 14.674 r_dihedral_angle_1_deg 5.914 r_long_range_B_refined 4.964 r_long_range_B_other 4.901 r_scangle_other 2.612 r_mcangle_it 2.369 r_mcangle_other 2.369 r_scbond_it 1.551 r_scbond_other 1.551 r_angle_refined_deg 1.456 r_mcbond_it 1.402 r_mcbond_other 1.401 r_angle_other_deg 0.928 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3898 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing