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Anti-Ricin A-chain Single Domain Antibody A3C8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FHB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 290 0.1 M Citric acid pH 5.0, 1.6 M Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 1.9 35.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.883 α = 90 b = 44.395 β = 90 c = 143.77 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD BRUKER SMART 6000 2014-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR-H 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 47.92 100 0.1663 12.24 11.52 6826
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 100 0.445 3.47 8.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4fhb 2.7 47.92 6455 327 99.97 0.20056 0.19827 0.2055 0.24595 0.2399 RANDOM 27.034
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.8 0.39 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.138 r_dihedral_angle_4_deg 19.63 r_dihedral_angle_3_deg 14.658 r_dihedral_angle_1_deg 6.56 r_long_range_B_refined 4.774 r_long_range_B_other 4.73 r_angle_other_deg 3.918 r_mcangle_it 2.48 r_mcangle_other 2.479 r_scangle_other 2.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.138 r_dihedral_angle_4_deg 19.63 r_dihedral_angle_3_deg 14.658 r_dihedral_angle_1_deg 6.56 r_long_range_B_refined 4.774 r_long_range_B_other 4.73 r_angle_other_deg 3.918 r_mcangle_it 2.48 r_mcangle_other 2.479 r_scangle_other 2.345 r_angle_refined_deg 1.482 r_mcbond_it 1.415 r_mcbond_other 1.415 r_scbond_it 1.335 r_scbond_other 1.315 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1920 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SADABS data scaling PHASER phasing