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SACCHAROMYCES CEREVISIAE PHOSPHOGLYCERATE MUTASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4PGM PDB ENTRY 4PGM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.65 pH 8.65
Crystal Properties Matthews coefficient Solvent content 2.89 57.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.497 α = 90 b = 93.262 β = 90.15 c = 147.329 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH TOROIDAL MIRROR 1997-09-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.5 SRS PX9.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 30 89.5 0.062 8.3 2.6 120182
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.12 2.24 80.5 0.182 4 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4PGM 2.12 30 113189 5659 89.5 0.196 0.196 0.1996 0.228 RANDOM 23.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.77 -0.7222 -5.1 2.33
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.21 x_angle_deg 1.84 x_improper_angle_d 1.76 x_bond_d 0.016 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.21 x_angle_deg 1.84 x_improper_angle_d 1.76 x_bond_d 0.016 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7487 Nucleic Acid Atoms Solvent Atoms 819 Heterogen Atoms 40
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement MOSFLM data reduction CCP4 data scaling X-PLOR phasing