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rat catechol O-methyltransferase in complex with N-[5-(6-aminopurin-9-yl)pentyl]-5-(4-fluorophenyl)-2,3-dihydroxybenzamide at 1.30A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other INHOUSE MODEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties Matthews coefficient Solvent content 2.2 44.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.994 α = 90 b = 54.03 β = 90 c = 80.843 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 40.42 99 0.059 18.47 6.85 54119 -3 16.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 90.5 0.557 2.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT INHOUSE MODEL 1.3 40.42 50171 2677 96.6 0.123 0.121 0.157 0.1677 RANDOM 9.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.458 r_dihedral_angle_4_deg 20.924 r_dihedral_angle_3_deg 11.984 r_sphericity_free 8.962 r_dihedral_angle_1_deg 5.282 r_scangle_it 4.856 r_scbond_it 3.558 r_sphericity_bonded 3.438 r_mcangle_it 2.457 r_angle_refined_deg 1.843
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.458 r_dihedral_angle_4_deg 20.924 r_dihedral_angle_3_deg 11.984 r_sphericity_free 8.962 r_dihedral_angle_1_deg 5.282 r_scangle_it 4.856 r_scbond_it 3.558 r_sphericity_bonded 3.438 r_mcangle_it 2.457 r_angle_refined_deg 1.843 r_mcbond_it 1.677 r_rigid_bond_restr 1.656 r_angle_other_deg 1.03 r_mcbond_other 0.735 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1683 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing