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humanized rat catechol O-methyltransferase in complex with single conformation of 5-(4-fluorophenyl)-2,3-dihydroxy-N-[2-(3-pyridin-4-yl-1H-1,2,4-triazol-5-yl)ethyl]benzamide at 1.24A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties Matthews coefficient Solvent content 2.21 44.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.939 α = 90 b = 53.909 β = 90 c = 80.984 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999900 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.24 44.88 98.6 0.054 0.057 0.999 25.58 9.24 61895 -3 16.237
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.24 1.27 86.4 0.267 0.289 0.964 7.72
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.24 44.88 57864 3066 96.98 0.115 0.1139 0.112 0.1351 0.1325 RANDOM 11.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.2 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.303 r_dihedral_angle_4_deg 17.435 r_rigid_bond_restr 14.793 r_sphericity_free 11.867 r_dihedral_angle_3_deg 11.827 r_sphericity_bonded 6.963 r_dihedral_angle_1_deg 5.085 r_angle_refined_deg 1.558 r_angle_other_deg 0.941 r_mcbond_it 0.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.303 r_dihedral_angle_4_deg 17.435 r_rigid_bond_restr 14.793 r_sphericity_free 11.867 r_dihedral_angle_3_deg 11.827 r_sphericity_bonded 6.963 r_dihedral_angle_1_deg 5.085 r_angle_refined_deg 1.558 r_angle_other_deg 0.941 r_mcbond_it 0.138 r_mcbond_other 0.107 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1673 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 65
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing