☰ Navigation Tabs
Crystal structure of TNKS2 in complex with 2-[4-(4-methyl-2-oxoimidazolidin-4-yl)phenyl]-3,4-dihydroquinazolin-4-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3U9H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2 M LISO4, 0.1 M TRIS HCL, 22% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.44 49.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.56 α = 90 b = 98.39 β = 90 c = 118.44 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 100 14.31 7.52 49798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3u9h 1.8 44.38 47308 2490 99.97 0.16834 0.16697 0.1778 0.19398 0.2028 RANDOM 30.103
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -1.2 1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.641 r_dihedral_angle_4_deg 16.484 r_dihedral_angle_3_deg 13.31 r_long_range_B_refined 6.391 r_long_range_B_other 6.39 r_dihedral_angle_1_deg 6.197 r_scangle_other 4.338 r_mcangle_it 2.823 r_mcangle_other 2.822 r_scbond_it 2.659
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.641 r_dihedral_angle_4_deg 16.484 r_dihedral_angle_3_deg 13.31 r_long_range_B_refined 6.391 r_long_range_B_other 6.39 r_dihedral_angle_1_deg 6.197 r_scangle_other 4.338 r_mcangle_it 2.823 r_mcangle_other 2.822 r_scbond_it 2.659 r_scbond_other 2.658 r_mcbond_it 1.902 r_mcbond_other 1.902 r_angle_refined_deg 1.435 r_angle_other_deg 0.919 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3347 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing