☰ Navigation Tabs
Human STK10 bound to dovitinib
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other STK10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.1M sodium formate, 15%(w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.41 48.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.57 α = 90 b = 50.4 β = 96.6 c = 114.57 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 57.19 91.4 0.14 0.984 4.7 2.8 16619
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.86 91.8 0.61 0.692 1.3 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT STK10 2.7 57.19 15674 838 90.33 0.26535 0.26322 0.267 0.30495 0.3031 RANDOM 54.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.44 1.36 -0.89 -1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.964 r_dihedral_angle_3_deg 18.044 r_dihedral_angle_4_deg 12.714 r_dihedral_angle_1_deg 7.346 r_long_range_B_refined 3.869 r_long_range_B_other 3.869 r_angle_refined_deg 1.693 r_scangle_other 1.535 r_mcangle_it 1.495 r_mcangle_other 1.495
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.964 r_dihedral_angle_3_deg 18.044 r_dihedral_angle_4_deg 12.714 r_dihedral_angle_1_deg 7.346 r_long_range_B_refined 3.869 r_long_range_B_other 3.869 r_angle_refined_deg 1.693 r_scangle_other 1.535 r_mcangle_it 1.495 r_mcangle_other 1.495 r_angle_other_deg 1.06 r_scbond_other 0.859 r_scbond_it 0.858 r_mcbond_it 0.817 r_mcbond_other 0.817 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3843 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing