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Beta-L-arabinofuranosidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 200 mM ammonium formate, 20% PEG 3350, 500 mM L-arabinose
Crystal Properties Matthews coefficient Solvent content 2.38 48.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.21 α = 90 b = 96.21 β = 90 c = 187.84 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9796 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 28.54 100 0.999 17.33 72.37 56151
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 100 0.831 2.11 74.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 28.54 53209 2857 99.93 0.17022 0.16822 0.1687 0.20709 0.2071 RANDOM 34.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.39 -1.39 2.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.021 r_dihedral_angle_4_deg 18.641 r_dihedral_angle_3_deg 12.892 r_dihedral_angle_1_deg 6.56 r_long_range_B_refined 4.973 r_long_range_B_other 4.973 r_scangle_other 3.922 r_mcangle_it 2.661 r_mcangle_other 2.661 r_scbond_it 2.661
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.021 r_dihedral_angle_4_deg 18.641 r_dihedral_angle_3_deg 12.892 r_dihedral_angle_1_deg 6.56 r_long_range_B_refined 4.973 r_long_range_B_other 4.973 r_scangle_other 3.922 r_mcangle_it 2.661 r_mcangle_other 2.661 r_scbond_it 2.661 r_scbond_other 2.661 r_mcbond_it 1.928 r_mcbond_other 1.927 r_angle_refined_deg 1.546 r_angle_other_deg 0.977 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6134 Nucleic Acid Atoms Solvent Atoms 355 Heterogen Atoms 11
Software Software Software Name Purpose XDS data reduction XDS data scaling Aimless data scaling SHELXCD phasing SHELXE model building ARP/wARP model building BUCCANEER model building Coot model building REFMAC refinement