5OLF

Ligand-Based NMR Study of C-X-C Chemokine Receptor Type 4 (CXCR4)-Ligand Interactions in Living Cancer Cells


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY2.0 mM NA peptide, 10 % [U-99% 2H] D2O90% H2O/10% D2O0 mM5.51 atm298Varian INOVA 600
22D 1H-1H TOCSY2.0 mM NA peptide, 10 % [U-99% 2H] D2O90% H2O/10% D2O0 mM5.51 atm298Varian INOVA 600
32D DQF-COSY2.0 mM NA peptide, 10 % [U-99% 2H] D2O90% H2O/10% D2O0 mM5.51 atm298Varian INOVA 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealingDYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMRVarian
2chemical shift assignmentXEASYBartels et al.
3structure calculationDYANAGuntert, Braun and Wuthrich