☰ Navigation Tabs
Cu nitrite reductase serial data at varying temperatures RT 0.06MGy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5I6K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 100 mM sodium citrate at pH 5.0 and ~1.7 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.03 39.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.237 α = 90 b = 96.237 β = 90 c = 96.237 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M 2014-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.8 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 55.56 99.7 0.077 0.99 5.3 3.3 48509
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.53 99.8 0.576 0.5 1.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5i6K 1.49 55.56 46026 2452 99.56 0.16069 0.15945 0.1598 0.18404 0.1845 RANDOM 19.406
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.912 r_dihedral_angle_4_deg 18.861 r_dihedral_angle_3_deg 13.943 r_dihedral_angle_1_deg 7.471 r_long_range_B_refined 5.831 r_long_range_B_other 5.825 r_scangle_other 4.002 r_scbond_it 2.603 r_scbond_other 2.498 r_mcangle_it 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.912 r_dihedral_angle_4_deg 18.861 r_dihedral_angle_3_deg 13.943 r_dihedral_angle_1_deg 7.471 r_long_range_B_refined 5.831 r_long_range_B_other 5.825 r_scangle_other 4.002 r_scbond_it 2.603 r_scbond_other 2.498 r_mcangle_it 2.18 r_mcangle_other 2.18 r_angle_refined_deg 1.676 r_mcbond_it 1.424 r_mcbond_other 1.418 r_angle_other_deg 0.969 r_chiral_restr 0.104 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2566 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DIALS data collection XDS data reduction Aimless data scaling