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Free DNA_hairpin polyamides studies
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') 90% H2O/10% D2O 100mM phoshate mM 7.4 1 atm 298 Bruker AVANCE 600 2 2D 1H-1H TOCSY 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') 90% H2O/10% D2O 100mM phoshate mM 7.4 1 atm 298 Bruker AVANCE 600 3 2D DQF-COSY 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') 90% H2O/10% D2O 100mM phoshate mM 7.4 1 atm 298 Bruker AVANCE 600 4 2D 1H-13C HSQC 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') 90% H2O/10% D2O 100mM phoshate mM 7.4 1 atm 298 Bruker AVANCE 600 5 31P- H COSY 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') 90% H2O/10% D2O 100mM phoshate mM 7.4 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 10
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky Goddard 2 processing TopSpin Bruker Biospin 3 structure calculation MARDIGRAS N. Ulyanov 4 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 5 structure calculation UCSF Chimera UCSF 6 peak picking Sparky Goddard