X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OSM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP62950.08 M Magnesium Acetate tetrahydrate , 0.1 M sodium citrate, 14% w/v 5000 PEG MME
Crystal Properties
Matthews coefficientSolvent content
3.3764

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 232.316α = 90
b = 74.511β = 112.18
c = 90.814γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-01-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.979DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65107.5798.50.03911.63.816993316.98
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.6897.30.6070.6891.63.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1OSM1.65107.57161366856398.520.148290.146110.18963RANDOM29.285
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.490.65-0.521.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.941
r_sphericity_free35.742
r_dihedral_angle_4_deg18.711
r_sphericity_bonded15.522
r_dihedral_angle_3_deg12.56
r_dihedral_angle_1_deg6.361
r_long_range_B_refined5.177
r_long_range_B_other4.945
r_scangle_other4.789
r_scbond_other4.185
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.941
r_sphericity_free35.742
r_dihedral_angle_4_deg18.711
r_sphericity_bonded15.522
r_dihedral_angle_3_deg12.56
r_dihedral_angle_1_deg6.361
r_long_range_B_refined5.177
r_long_range_B_other4.945
r_scangle_other4.789
r_scbond_other4.185
r_scbond_it4.184
r_mcangle_it3.745
r_mcangle_other3.745
r_mcbond_other3.065
r_mcbond_it3.064
r_rigid_bond_restr2.785
r_angle_refined_deg1.588
r_angle_other_deg0.939
r_chiral_restr0.107
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8027
Nucleic Acid Atoms
Solvent Atoms635
Heterogen Atoms57

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing