☰ Navigation Tabs
Crystal structure of P450 CYP121 in complex with compound 6a.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Inhouse
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 1.5 to 2.1 M ammonium sulfate and 0.1 M sodium MES or Cacodylate from pH 5.5 to 6.15
Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.53 α = 90 b = 77.53 β = 90 c = 264.95 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 67.14 100 0.169 0.041 0.99 12.5 19 58784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.7 100 1.94 0.451 0.486 1.7 20
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Inhouse 1.64 67.14 56784 2000 99.85 0.16358 0.16263 0.1772 0.19048 0.1998 RANDOM 23.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.305 r_dihedral_angle_4_deg 16.437 r_dihedral_angle_3_deg 12.854 r_long_range_B_refined 8.066 r_long_range_B_other 7.946 r_scangle_other 6.735 r_dihedral_angle_1_deg 5.327 r_scbond_it 4.911 r_scbond_other 4.91 r_mcangle_other 2.485
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.305 r_dihedral_angle_4_deg 16.437 r_dihedral_angle_3_deg 12.854 r_long_range_B_refined 8.066 r_long_range_B_other 7.946 r_scangle_other 6.735 r_dihedral_angle_1_deg 5.327 r_scbond_it 4.911 r_scbond_other 4.91 r_mcangle_other 2.485 r_mcangle_it 2.484 r_mcbond_it 1.893 r_mcbond_other 1.891 r_angle_refined_deg 1.682 r_angle_other_deg 1.51 r_chiral_restr 0.109 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3031 Nucleic Acid Atoms Solvent Atoms 402 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing