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Structure of Latex Clearing Protein LCP in the closed state
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298.15 16 % (w/v) PEG 3350, 0.2 M L-proline, 0.1 M HEPES/NaOH
Crystal Properties Matthews coefficient Solvent content 2.23 44.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.863 α = 74.25 b = 56.544 β = 86.07 c = 63.861 γ = 71.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.73672 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 61.45 87.2 0.065 0.039 0.997 12.3 3.7 30914
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 83.7 0.18 0.932 3.8 3.7 2566
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 61.45 29365 1549 87.24 0.1769 0.1745 0.1891 0.2227 0.2306 RANDOM 38.276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 1.28 1.88 -0.18 -0.03 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.699 r_dihedral_angle_4_deg 18.15 r_dihedral_angle_3_deg 15.881 r_dihedral_angle_1_deg 6.096 r_angle_refined_deg 2.007 r_angle_other_deg 1.123 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.699 r_dihedral_angle_4_deg 18.15 r_dihedral_angle_3_deg 15.881 r_dihedral_angle_1_deg 6.096 r_angle_refined_deg 2.007 r_angle_other_deg 1.123 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5688 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing