5NYT
M2 G-quadruplex 20 wt% ethylene glycol
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.2 mM 0 M2 20EG | 90% H2O/10% D2O | 120 mM | 6.5 | 1 bar | 298 | Varian Uniform NMR System 800 |
2 | 2D 1H-1H TOCSY | 0.2 mM 0 M2 20EG | 90% H2O/10% D2O | 120 mM | 6.5 | 1 bar | 298 | Varian Uniform NMR System 800 |
3 | 2D DQF-COSY | 0.2 mM 0 M2 20EG | 90% H2O/10% D2O | 120 mM | 6.5 | 1 bar | 298 | Varian Uniform NMR System 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | Uniform NMR System | 600 |
2 | Varian | Uniform NMR System | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure calculation | Amber | 14 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
2 | collection | VNMR | Varian | |
3 | chemical shift assignment | Sparky | Goddard |