5NJT
Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
ELECTRON MICROSCOPY
Sample |
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Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | |
Cryogen Name | ETHANE |
Sample Vitrification Details |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 24546 |
Reported Resolution (Å) | 3.8 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | 30S-70S_subcomplex primary map: 70S-30S_Masked_embf41.mrc |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
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Id | 1 | ||||
Refinement Space | |||||
Refinement Protocol | |||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | FEI FALCON II (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 2.5 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | |
Maximum Defocus (nm) | |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
PARTICLE SELECTION | Signature | 2.0 |
CTF CORRECTION | CTFFIND | 4 |
MODEL FITTING | UCSF Chimera | 1.11.2 |
MODEL REFINEMENT | PHENIX | |
INITIAL EULER ASSIGNMENT | FREALIGN | 9.11 |
FINAL EULER ASSIGNMENT | FREALIGN | 9.11 |
CLASSIFICATION | FREALIGN | 9.11 |
RECONSTRUCTION | FREALIGN | 9.11 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 253905 |