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sfGFP 204-204 mutant dimer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5BT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 PACT condition C6: 0.1M PCTP Buffer, pH 9.0, 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.35 47.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.7 α = 90 b = 98.02 β = 90 c = 102.64 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.28 57.17 99.9 17.7 7.2 249821
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5BT0 1.28 57.17 237488 12228 99.91 0.17495 0.17411 0.19102 0.2051 RANDOM 23.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 1.44 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.996 r_dihedral_angle_3_deg 12.315 r_dihedral_angle_4_deg 10.759 r_dihedral_angle_1_deg 5.71 r_long_range_B_refined 4.895 r_long_range_B_other 4.892 r_scangle_other 2.484 r_angle_refined_deg 2.264 r_scbond_it 1.725 r_scbond_other 1.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.996 r_dihedral_angle_3_deg 12.315 r_dihedral_angle_4_deg 10.759 r_dihedral_angle_1_deg 5.71 r_long_range_B_refined 4.895 r_long_range_B_other 4.892 r_scangle_other 2.484 r_angle_refined_deg 2.264 r_scbond_it 1.725 r_scbond_other 1.718 r_angle_other_deg 1.146 r_mcangle_it 1.101 r_mcangle_other 1.101 r_mcbond_it 0.675 r_mcbond_other 0.675 r_chiral_restr 0.145 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7250 Nucleic Acid Atoms Solvent Atoms 975 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing