X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5277.15Well solution: 12% PEG 1000, 28% glycerol, 1.5%(w/v) PEG 3350 Cryo: 25% propylene glycol Protein concentration: 11 mg/mL
Crystal Properties
Matthews coefficientSolvent content
3.4364.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.64α = 90
b = 82.64β = 90
c = 148.62γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-10-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92820DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9682.6499.980.0520.99916.956.967692

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.9682.6467692357099.980.186490.185330.20648RANDOM53.966
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.371.37-2.74
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.296
r_dihedral_angle_4_deg17.549
r_dihedral_angle_3_deg13.894
r_long_range_B_other9.916
r_long_range_B_refined9.914
r_scangle_other7.903
r_dihedral_angle_1_deg6.993
r_mcangle_it6.453
r_mcangle_other6.452
r_scbond_it5.495
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.296
r_dihedral_angle_4_deg17.549
r_dihedral_angle_3_deg13.894
r_long_range_B_other9.916
r_long_range_B_refined9.914
r_scangle_other7.903
r_dihedral_angle_1_deg6.993
r_mcangle_it6.453
r_mcangle_other6.452
r_scbond_it5.495
r_scbond_other5.495
r_mcbond_it4.672
r_mcbond_other4.671
r_angle_refined_deg1.878
r_angle_other_deg1.074
r_chiral_restr0.121
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4387
Nucleic Acid Atoms
Solvent Atoms217
Heterogen Atoms139

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
SHELXDphasing