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CDK2/Cyclin A in complex with compound 73
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H1S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 PROTEIN AT 5MG PER ML. 0.6 TO 0.8M KCL, 0.9 TO 1.2M (NH402SO4, AND 100MM HEPES (PH 7.0)
Crystal Properties Matthews coefficient Solvent content 2.81 56.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.527 α = 90 b = 132.053 β = 90 c = 149.22 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.969 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.97 66.03 100 0.086 6.7 704 30773
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.97 3.13 99.7 1.6 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H1S 2.97 66.03 29173 1544 99.95 0.21992 0.21767 0.2163 0.26119 0.26 RANDOM 80.244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -1.63 2.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.246 r_dihedral_angle_4_deg 19.116 r_dihedral_angle_3_deg 18.442 r_dihedral_angle_1_deg 7.086 r_long_range_B_refined 2.612 r_long_range_B_other 2.612 r_angle_refined_deg 1.944 r_angle_other_deg 1.341 r_mcangle_it 1.145 r_mcangle_other 1.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.246 r_dihedral_angle_4_deg 19.116 r_dihedral_angle_3_deg 18.442 r_dihedral_angle_1_deg 7.086 r_long_range_B_refined 2.612 r_long_range_B_other 2.612 r_angle_refined_deg 1.944 r_angle_other_deg 1.341 r_mcangle_it 1.145 r_mcangle_other 1.145 r_scangle_other 0.971 r_mcbond_it 0.629 r_mcbond_other 0.629 r_scbond_it 0.54 r_scbond_other 0.54 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8886 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing