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Torpedo californica acetylcholinesterase in complex with a non-chiral donepezil-like compound 20
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277.15 MES pH 6.2, 100 mM
PEG 200, 30%
Crystal Properties Matthews coefficient Solvent content 4.01 69.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.62 α = 90 b = 111.62 β = 90 c = 136.71 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.0 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 48.33 99.8 0.196 4.7 7 47111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 99.9 0.86 1.5 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 48.33 44654 2369 99.5 0.189 0.187 0.228 0.2361 RANDOM 38.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 1.41 1.41 -4.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.761 r_dihedral_angle_4_deg 18.553 r_dihedral_angle_3_deg 15.113 r_long_range_B_refined 7.842 r_long_range_B_other 7.83 r_dihedral_angle_1_deg 7.042 r_scangle_other 6.624 r_mcangle_it 4.763 r_mcangle_other 4.763 r_scbond_it 4.549
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.761 r_dihedral_angle_4_deg 18.553 r_dihedral_angle_3_deg 15.113 r_long_range_B_refined 7.842 r_long_range_B_other 7.83 r_dihedral_angle_1_deg 7.042 r_scangle_other 6.624 r_mcangle_it 4.763 r_mcangle_other 4.763 r_scbond_it 4.549 r_scbond_other 4.548 r_mcbond_it 3.277 r_mcbond_other 3.272 r_angle_refined_deg 1.949 r_angle_other_deg 1.006 r_chiral_restr 0.123 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4205 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing