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CRYSTAL STRUCTURE OF STREPTAVIDIN with D-amino acid containing peptide GGwhdeatwkpG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1M Magnesium acetate
0.1M MOPS pH 7.5
12% PEG8000
Crystal Properties Matthews coefficient Solvent content 1.87 34.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.882 α = 90 b = 95.72 β = 90 c = 82.059 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99999 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 62.3 99.2 0.048 0.99 17.4 6.2 122566
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.2 96.8 0.4 0.792 4.01 5.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 62.3 122566 6448 99.13 0.13599 0.13521 0.1351 0.15093 0.1507 RANDOM 11.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.07 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.825 r_dihedral_angle_4_deg 20.931 r_sphericity_free 17.315 r_dihedral_angle_3_deg 10.047 r_dihedral_angle_1_deg 7.239 r_sphericity_bonded 3.643 r_long_range_B_refined 2.033 r_long_range_B_other 2.032 r_angle_refined_deg 1.403 r_rigid_bond_restr 1.057
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.825 r_dihedral_angle_4_deg 20.931 r_sphericity_free 17.315 r_dihedral_angle_3_deg 10.047 r_dihedral_angle_1_deg 7.239 r_sphericity_bonded 3.643 r_long_range_B_refined 2.033 r_long_range_B_other 2.032 r_angle_refined_deg 1.403 r_rigid_bond_restr 1.057 r_angle_other_deg 0.849 r_mcangle_it 0.687 r_mcangle_other 0.687 r_scangle_other 0.604 r_scbond_it 0.499 r_scbond_other 0.499 r_mcbond_it 0.484 r_mcbond_other 0.481 r_chiral_restr 0.084 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1986 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling PHASER phasing