☰ Navigation Tabs
Crystal Structure of CobH T85A (precorrin-8x methyl mutase) complexed with C5 allyl-HBA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292.15 20% PEG 8000, 0.2M Calcium acetate hydrate, 0.1M Sodium cacodylate pH6.5, 20% methanol
Crystal Properties Matthews coefficient Solvent content 2.62 53.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.23 α = 90 b = 66.63 β = 99.03 c = 48.92 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 48.38 92.4 0.2 0.279 0.84 2.67 1.815 57377 -3 24.882
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.61 90.9 0.747 1.022 0.378 0.99 1.793
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.57 48.38 29762 1461 98.81 0.1753 0.1723 0.1918 0.2384 0.2405 RANDOM 23.096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.67 0.04 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.23 r_sphericity_free 21.544 r_dihedral_angle_4_deg 14.721 r_dihedral_angle_3_deg 13.584 r_dihedral_angle_1_deg 6.667 r_sphericity_bonded 6.226 r_rigid_bond_restr 5.647 r_angle_refined_deg 2.731 r_angle_other_deg 1.278 r_chiral_restr 0.172
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.23 r_sphericity_free 21.544 r_dihedral_angle_4_deg 14.721 r_dihedral_angle_3_deg 13.584 r_dihedral_angle_1_deg 6.667 r_sphericity_bonded 6.226 r_rigid_bond_restr 5.647 r_angle_refined_deg 2.731 r_angle_other_deg 1.278 r_chiral_restr 0.172 r_bond_refined_d 0.03 r_gen_planes_refined 0.015 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1530 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 71
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction REFMAC phasing