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UDP-Glucose Glycoprotein Glucosyltransferase from Chaetomium thermophilum (open conformation)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MU1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 24 mM Morpheus alchools mix, 20 mM Morpheus buffer system 3 pH 8.5, 2.5% v/v MPD, 2.5% w/v PEG 1000, 2.5% w/v PEG 3350, 1.6 mM CaCl2 and 50 uM UDP-glucose
Crystal Properties Matthews coefficient Solvent content 2.83 56.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.57 α = 90 b = 163.57 β = 90 c = 248.584 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91741 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.48 124.29 100 0.25 0.26 0.1 0.997 9.2 11.8 25652 103.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.48 3.68 99.9 3.18 3.33 1.29 0.49 0.8 12.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 5MU1 3.48 102 25379 1281 98 0.252 0.251 0.2848 0.278 0.3235 RANDOM 171.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -24.2068 -24.2068 48.4137
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18 t_omega_torsion 3.22 t_angle_deg 1.21 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18 t_omega_torsion 3.22 t_angle_deg 1.21 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11035 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 168
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling PHASER phasing